![]() I'm using NAMD and VMD.Ĭommand: interdigitation -structure /home/nurhanna/DinamikaMolekul/DLiPS/DLiPS-third_try/LiS440_ionized_ver2.psf -trajectory /home/nurhanna/DinamikaMolekul/DLiPS/DLiPS-third_try/system-npt-01. The atoms displayed in each representation are chosen using an extensive atom selection syntax, which includes Boolean operators and regular expressions. I've tried to look at another discussion and general requirement but I found nothing. DCD for trajectory, changed the resname so it same as the topology and. Control panel Extension VMD preference Edit. 6 Select the Center menu item and pick one atom at one of the ends of the. But when I change to DLiPS or DLiPC, it became Error although I use the same step as before. This tutorial is based on a VMD tutorial version created by Jordi Cohen. I have tried using Lipid Interdigitation on my DLPS and DOPS molecule, and it's turned okay. I'd like to ask a problem when I try to calculate DLiPS and DLiPC using Lipid Interdigitation.
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